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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAGCGATGAGTTCAAGCGTGTGATCGGGTCTCTCCGCGGGCATGATGACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattgtattcccgattaccgccataatgcccttttttctctctatccctctcagcaagtcagcatattccattttcttgctgctgtagtgctata...

Basic information

species Zea mays
transcript GRMZM2G065012_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 12
CATCAGCGATGAGTTCAAGCGTGTGATCGGGTCTCTCCGCGGGCATGATGACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattgt----attcccgattaccgccataatgcccttttttctctctatccctctcagcaagtcagcatattccattttcttgct-gctgtagtgctata----------------------------------------------------------------------------------------
|||||| ||||||||||||||||| || ||||| |||   ||||||||||| || ||||| |||||||| ||||| || ||||||||||||||||| || | |||| || |    || ||    ||  |  ||||     |   || ||    ||  | |    | |  |  | ||       | |     |    | || | |                                                                                         
CATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGGCATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAAgtgagtgttattgctatccctttatagtgtgataacatattccattttcatcctctttatgcataggaaaaaaaatcatggagtgtgataagaaacattgatttgttttttacatttcaagtggagacaaaaaagagtagctatgttgattgaaagcaaataacgactttgcttctgacaaatttatcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149102174|gb|EE287594.2|EE287594
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: gi|50323441|gb|CO518567.1|CO518567
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: gi|211180215|gb|FK950406.1|FK950406
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGC
EST: gi|22545340|gb|BU097699.1|BU097699
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: gi|116827521|gb|EC871429.1|EC871429
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: gi|78124010|gb|DV542394.1|DV542394
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAT                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGAGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: gi|211180217|gb|FK950408.1|FK950408
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: gi|211180216|gb|FK950407.1|FK950407
EST:     ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG                         CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC