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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttgttttcttgttgttatcttgattttttttcattagtgtttcttaacgcgacaagacaacgacagctgtcaatgtgatactttatctttaat...

Basic information

species Zea mays
transcript GRMZM2G063909_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 13
TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttgttttcttgttgttatcttgattttttttcattagtgtttct--taacgcgacaagacaacgacagctgtcaatgtgatactttatctttaat
|||||||||||| || ||| ||||| |||||||||| |||||||||||  ||||||  ||||| | |   |   ||||| |  |||||||| ||   |  |    ||     |  | | |  |     | | ||  ||| |    
TGATCATGAAGGTGGAAATGTCAGTGCTCATACTGGACATCTGgtaattattgtttctttgttttcaatgttgatttttcttgttagtgttgctaacattgttttaacctgccaccggatcactgctggctgctgcatcatcc--

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 13
TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttgt-tttcttgttgttatcttgattttttttcattagtgtttct--taacgcgacaagacaac-gacagctgtcaatgtgatactttatctttaat
|||||||||||| || ||  ||||| |||||||||| ||||||||||| ||||| ||||| |||   ||   | |||||| |  ||||  || |   ||  |    ||  |  |  |  | |        | | ||  ||| |    
TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttgtatttctggtttcaatgcagtttttttcttgttagcattgccactattgttgtaaacctgccaatggatcatttctggctgctacatcat----

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 13
TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaat---------atttgtttt--cttgtt------------gttatcttgattttttt------------tcattagtgtttcttaacgcgac--aagacaacgacagct----------gtcaatgtgatactttatctttaat-------------------------------------------------
||||||||||||||||||| ||||| |||| ||||||||||| ||||          ||| ||| |   | |||            || || ||| | | |||            |||||| | | || | | |  |   ||   ||  |  |||          |||| |||| |  ||  | |||| |                                                 
TGATCATGAAGGCGGGAATGTCAGTGCTCACACTGGTCATCTAgtaagtgagcctagattcgttctaattagttaaatggaaatgtgtaattttgttgtatttccgagggtaaagtcattattttatcctgaagttatttaatggaattatggctcatattttcagtcagtgtgtttgttattatttagtgatcatgaagaggaatgttctctattgactgatattatgctcaattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354991|gb|DN221964.1|DN221964
EST:     TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
genomic: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
EST: gi|60345083|gb|DN212056.1|DN212056
EST:     TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
genomic: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
EST: gi|40334210|gb|CK368280.1|CK368280
EST:     GAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
genomic: GAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT