Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGTATCTTGGAGACGGTTCGGCGTTGCACAGCTGTTGACCATACTGCGCCAACTCTTATGTGCACACTTGGTGTTGCTAATGCAATCTATAAACAAgttagttcttgtctttgcatgtcctttcttaccgtagctgaattctgagcggtttttcccatgccaagaagggcaggcctggtgcagtggtgaaagctgt...

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g42950.1 (Oryza sativa), 5'ss of exon 12
ATTGGGTATCTTGGAGACGGTTCGGCGTTGCACAGCTGTTGACCATACTGCGCCAACTCTTATGTGCACACTTGGTGTTGCTAATGCAATCTATAAACAAgttagttcttgtctttgcatgtcctttcttaccgtagctgaattctgagcggtt-tttcccatgccaagaagggcaggcctggtgcagtggtgaaagctgt--------------------
| |||  |||||| | ||  |||||||||| |||||||||||||| || || ||||| ||||||||||| ||||| || ||||||||||| | |||||| ||| |||||||       ||    | | | |   | ||| |||  ||| |  || |||   |||||||          | ||    ||   |   |  |                      
ACTGGAGATCTTGCAAACTCTTCGGCGTTGTACAGCTGTTGACCACACCGCACCAACACTTATGTGCACCCTTGGAGTGGCTAATGCAATTTTTAAACAGgtttgttcttg-----atatagtttgtttcagtattgctaaatcatgaacaattattttttatgccaattgatttttccttgtaaaagatatcttattttactcatttgccaatgatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211454621|gb|FL182680.1|FL182680
EST:     CGCCAACTCTTATGTGCACACTTGGTGTTGCTAATGCAATCTATAAACAA                         TGTGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTA
genomic: CGCCAACTCTTATGTGCACACTTGGTGTTGCTAATGCAATCTATAAACAAgttagttctt ... tctgatccagTGCGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTA