1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAGGGCTGGACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagcatgaaacatgaatgcgcacacatgcccccatgaaaaacaaaggcaccatgctcaacaccgatttatttttctgagaatacgcaagatagttgtgtatctctgtattaagagctaaagtagagatcaattatgctcgacactgaattcttctttaacag
species | Zea mays |
transcript | GRMZM2G058491_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAG AACCTGTGCACGACGGCAGCATATCGCCCTGTGAGGGAGCTAATCCAGAAGEST: gi|40335664|gb|CK369734.1|CK369734
genomic: TCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagca ... tctttaacagAACCTGTGCACGACGGCAGCGTATCGCCCTGTGAGAGAGCTAATCCAGAAG
EST: TCAAGGAGCTAGCAACCATGACAGAATGATATAGTGGAAGTGATCTCAAG AACCTGTGCACGACGGCAGCATATCGCCCTGTGAGGGAGCTAATCCAGAAGEST: gi|94477011|gb|EB705969.1|EB705969
genomic: TCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagca ... tctttaacagAACCTGTGCACGACGGCAGCGTATCGCCCTGTGAGAGAGCTAATCCAGAAG
EST: TCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATTTCAAG AACCTGTGCACGACGGCAGGGTATCGCCCTGTGAGAGAGTTAATCCAGAAG
genomic: TCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagca ... tctttaacagAACCTGTGCACGACGGCAGCGTATCGCCCTGTGAGAGAGCTAATCCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAGGGCTGGACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagcatgaaacatgaatgcgcacacatgcccccatgaaaaacaaaggcaccatgctcaacaccgatttatttttctgagaatacgcaagatagttgtgtatctctgtattaagagctaaagtagagatcaattatgctcgacactgaattcttctttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG