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TTTTCAAAAGCTCTGAATCGCTTCCAAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcacatcatccatttcaatttcaatttgtatttgtatttttgtgaagttcttaatacataaaatttgctagtag
species | Zea mays |
transcript | GRMZM2G056393_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCAGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|91874831|gb|EB404788.1|EB404788
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|6194594|gb|AW146698.1|AW146698
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|6020648|gb|AW065681.1|AW065681
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: GGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|211410070|gb|FL355701.1|FL355701
genomic: GGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|32801951|gb|CD954187.1|CD954187
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: GATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCAGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|118406757|gb|EH038205.1|EH038205
genomic: GATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|32788275|gb|CD940511.1|CD940511
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: GATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|211409847|gb|FL347405.1|FL347405
genomic: GATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|67017174|gb|CO445923.1|CO445923
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGTEST: gi|211430479|gb|FL350077.1|FL350077
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
EST: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG ACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
genomic: AAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcaca ... ttgctagtagACAATTATTTCCGGGATGGGTGAGCTGCATCTGGATATATACGTTGAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCAAAAGCTCTGAATCGCTTCCAAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAGgtttgtcacatcatccatttcaatttcaatttgtatttgtatttttgtgaagttcttaatacataaaatttgctagtag
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG