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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCACTTGTATTAACAAGGCTTGTTATGGCTTCACATTCGCCATCTGTGTTTCATCCATACATCAAGgtattgtagtctatcaatgttgagtagaatttggagactataggagtgactactgattgtaaatcaaatttccaggcactttctgcacctatactgtcaaatttataggagtggctactgattgtaaatcatattcttgggttatggaaatccttctgccgcacag

Basic information

species Zea mays
transcript GRMZM2G053644_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053644_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 14
GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCACTTGTATTAACAAGGCTTGTTATGGCTTCACATTCGCCATCTGTGTTTCATCCATACATCAAGgta-ttgtagtctatcaatgttgagtagaatttggagactataggagtgactactg-attg--taaatcaaatttccaggcactttctgcacctatactgtcaaatttataggagtggctactgattgtaaatcatattcttgggttatggaaatccttctgccgcacag
|| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||  |||||  |||||  |||  || || |||| ||| |    |    |   || |  | || ||||     |   || ||||||                                                                                           
GATAAGTCATCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTTACAAGACTTGTTATGGCTTCACATTCCCCAGCTGTGTTTCATCCATACATACAGgtaactgtagcgtat--atcttcagtaaaatatacttatggcatttgtcatcattgtattgatcgtagtgaaattccag-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G053644_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 10
GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCACTTGTATTAACAAGGCTTGTTATGGCTTCACATTCGCCATCTGTGTTTCATCCATACATCAAGgta-ttgtagtctatcaatgttgagtagaatttggagactataggagtgactactg-attg--taaatcaaatttccaggcactttctgcacctatactgtcaaatttataggagtggctactgattgtaaatcatattcttgggttatggaaatccttctgccgcacag
|| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||  |||||  ||||   |||  || || |||| ||| |    |    |   || |  | || ||||     |   || ||||||                                                                                           
GATAAGTCATCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTTACAAGACTTGTTATGGCTTCACATTCCCCAGCTGTGTTTCATCCATACATACAGgtaactgtaacatat--atcttcagtaaaatatacttatggcatttgtcatcattgtattgatcgtagtgaaattccag-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G053644_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 15
GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCACTTGTATTAACAAGGCTTGTTATGGCTTCACATTCGCCATCTGTGTTTCATCCATACATCAAGgtattgtagtctatcaatgttgagtagaatttggagactat---aggagtgactactgattgtaaatcaaatttccaggcactttctgcacctatactgtcaaatttataggagtggctactgattgtaaatcatattcttgggttatggaaatccttctgccgcacag
|| || || ||||| |||||| |||||||||| || ||| |||| |||||  | ||  ||||||| ||||| || ||||| || ||||| |||||||||||||     |  || |||      |   |||  |  |  ||   |  ||| | ||||  ||    ||    | |   |    |||||      |   |||| |                                                                  
GATAAATCCTCTACATCCAACTTGAAGATTGAGGCTCTTATATTCACAAGATTAGTGTTGGCTTCTCATTCACCTTCTGTTTTCCATCCTTACATCAAGgtatcacc-ttcattaattcacccttacattgaggtagcatcttaaaagtaattactc-ttaaggatgttgtcttttgtttgtttcttt--taaagttgtctat-----------------------------------------------------------------