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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACTTACAAGGTCTGTGCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttctcgttcttctttctttgctgaaatctcataattttctatttgtaagttaatcatactttttgtatgttgctgctgtgtttttttctaataa...

Basic information

species Zea mays
transcript GRMZM2G052875_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211535329|gb|FL357693.1|FL357693
EST:     GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|60350253|gb|DN217226.1|DN217226
EST:     GAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|211376353|gb|FL146646.1|FL146646
EST:     GGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|18964528|gb|BM661058.1|BM661058
EST:     GGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACCTTTCAGGTGG
genomic: GGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|18964529|gb|BM661059.1|BM661059
EST:     GGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|211376351|gb|FL146644.1|FL146644
EST:     GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|87151897|gb|DY396686.1|DY396686
EST:     GCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|211084967|gb|FL399106.1|FL399106
EST:     GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|211376352|gb|FL146645.1|FL146645
EST:     GCATATAAGATAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|211072830|gb|FL342711.1|FL342711
EST:     GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGN
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|31359162|gb|CD443519.1|CD443519
EST:     GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: gi|67026048|gb|CO454797.1|CO454797
EST:     GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG                         GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATACTTACAAGGTCTGTGCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttctcgttcttctttctttgctgaaatctcataattttctatttgtaagttaatcatactttttgtatgttgctgctgtgtttttttctaataa

- - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - -  CTGAAG