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AGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatacaatgtttatgttaggaaccatctaaaagtttatggaatgttgatagtttcattgtggaacgtaggcagctcttgaccatacctggtacat...
species | Zea mays |
transcript | GRMZM2G052546_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACEST: gi|67023551|gb|CO452300.1|CO452300
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... ctgaaggaagGA----CGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
EST: TGACATATGACGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCANATGGCTATGCAACEST: gi|71435429|gb|DR816479.1|DR816479
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... ctgaaggaagGA----CGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
EST: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGCEST: gi|32833853|gb|CD973531.1|CD973531
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... ctgaaggaagGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGC
EST: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGCEST: gi|32833578|gb|CD973256.1|CD973256
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... ctgaaggaagGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGC
EST: TGACATATGATGAGGAGTAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... ctgaaggaagGA----CGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatacaatgtttatgttaggaaccatctaaaagtttatggaatgttgatagtttcattgtggaacgtaggcagctcttgaccatacctggtacat
- - - - - - - - - - GAGGAG
- - - - - - - - - - - AGGAGA
- - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - GAGCTT