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GGAATCAAATATTCACGGAGGACTGATCCTACCTTCTGATGCACCTAGTAGTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcacttgcatgcataattatccaaaaagatgtattaaatggaatcatttgtctaagatcattttattactattttatagcatggctcattgcat...
species | Zea mays |
transcript | GRMZM2G052515_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|32945810|gb|CF050629.1|CF050629
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|110504398|gb|EE017326.1|EE017326
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|211359787|gb|FL457494.1|FL457494
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: GGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|50335209|gb|CO530335.1|CO530335
genomic: GGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: GTTCACAGGACATTTCAGGGATGATGAACATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|60394836|gb|DN227705.1|DN227705
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: TTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|211512271|gb|FL436232.1|FL436232
genomic: TTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: TTCACAGGACATTTCAGGGGATGATGAAGATGGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|31664297|gb|CD573022.1|CD573022
genomic: TTCACAGGACATTTCA-GGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|60394828|gb|DN227697.1|DN227697
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: TTCGGAGCTTGAT GCTGATACAGACTACTGGGCTCTTATCGGACAACACAGGAGTTAGCATGACEST: gi|76284708|gb|DV024276.1|DV024276
genomic: TTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACT-GGCTCTTATCGGACAACACAGGAGTTAGCATGAC
EST: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACGEST: gi|149098349|gb|EE184322.2|EE184322
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
EST: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGAT GCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
genomic: GTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcac ... atattgtcagGCTGATACAGACTACTGGCTCTTATCGGACAACACAGGAGTTAGCATGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATCAAATATTCACGGAGGACTGATCCTACCTTCTGATGCACCTAGTAGTTCACAGGACATTTCAGGGATGATGAAGATTGTCCCTTCGGAGCTTGATgtaagttcacttgcatgcataattatccaaaaagatgtattaaatggaatcatttgtctaagatcattttattactattttatagcatggctcattgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaga