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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGTTCTTGAGGTAGTGGTCGGAAGCAAAGGAATTTCTGGCGTAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataacttcgtaccaaccttagaattttccactggttatcagtaactagaaacaacccatgtcataatcatgttgcttatttgtagctccagctctgctgtgttcgataagtcatcttttaatcgatgtgaatacatgattaatggatctaccaatcttgcag

Basic information

species Zea mays
transcript GRMZM2G051032_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051032_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os08g06880.1 (Oryza sativa), 5'ss of exon 6
GCAAGTTCTTGAGGTAGTGGTCGGAAGCAAAGGAATTTCTGGCGTAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataacttcgtaccaaccttagaattttcca---ctggtt--atcagtaactagaaacaacccatgtca-taatcatgttgcttatttgtagctccagctctgctgtgttcgataagtcatcttttaatcg----atgtgaat-acatgattaatggatctaccaatcttgcag
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GCAAGTTCTTGAGGTTGTAGCTGGATGCAAAGGAATTTCTGACATTGAAGGCTTAAGTAAAACTCTGTACCACAACACGTGCAGgtaagctgtccgtgcgtcatgccgaaactttttgctgtctggtccaagtactcatctaatgcagtcaatttctctaaatttcacgagtaattttgcccttgatgctacagctctgcacgtctccaatttccatcagatcatgttattgagctcaatctttcatttctctgccttgcag

upper sequence: GRMZM2G051032_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 11
GCAAGTTCTTGAGGTAGTGGTCGGAAGCAAAGGAATTTCTGGCGTAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataacttcgtacca-accttagaattttccactggttatcagtaactagaaacaac----ccatgtcataatcatg-ttgcttatttgtagctccagctctgctgtgttcgataagtcatcttttaatcgatgtgaataca-tgattaatggatctaccaatcttgcag
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GCAAGTTCTTGAGGTTGTAGCTGGATGCAAAGGAATTGCTGACATTGAAGGCTTAAGTAAAACTCTGTACCACAACACGTGCAGgtaagctgtccgtgcgtcatgccttgctgtctggtctaagtactcatctaatgcagtcaatttctctaaattttactagtaattttgtccttgatgctacagctctgc-atgtct--ccaattttcatcagatc-atgttattgagctcaatctttcatttctctaccttgcag