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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccattgttttctttctgtgaacaagttaataaacttgccagacatgtccctaactaaacattctgttttttttgtag

Basic information

species Zea mays
transcript GRMZM2G048371_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048371_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 11
GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccat----tgttttctttctgtgaacaag--ttaataaacttgccaga--catgtccctaacta-aacattctgttttttttgtag-------------------------
|||||||| ||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| ||||| |||||||||||||         |||||  ||| ||  |  | |  ||     |||         |||||   |   || ||   | ||   || |||                            
GTTGTCATTGGAATGGATGTTGCTGCTTCGGAATTCTACAATGACAAGGACAAAACCTATGACCTTAACTTCAAGGAGGAGgtaggtggcaatctgtttcatttttgatagtagggattggctcactgtttgatatcatgtagatgtatataatgctgtgaacttattgggaacatttgtgattctttttgttgtag

upper sequence: GRMZM2G048371_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA16G32960.1 (Glycine max), 5'ss of exon 11
GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagac----------cattgt---tttctttctgtgaaca------------agttaa--taaacttgccagacatgt-ccctaactaaacattctgtt--ttttttgtag
||||| || || ||||||||||||||||| || ||||||  | |||||||  ||||||||||| | || |||||||| ||||| |||          |||| |   ||| ||  | ||||              |||| |  || | ||    | ||  | |  |||||| | |      |   || ||| ||
GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaattagaaacattttcccttttttcttttgaattttcatttttctcagttgagatatatttctttgtcagatgctttaactagataactgactaccttattgcag

upper sequence: GRMZM2G048371_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA09G28100.1 (Glycine max), 5'ss of exon 11
GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt-------gttttctttctgtgaacaagttaataaacttgcc------agacatgtccctaact-aaacattctgttttttttgtag---------------
||||| || || ||||||||||||||||| || |||||   | |||||||| ||||||||||| | || |||||||| ||||| ||| | |        |||||    | |     |  |  | |  ||||       ||| || |  ||   | |||   | |   |   |    |               
GTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTATGATAACAAGGACAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaacttagaaacattttcccaatttttcttaaattttcattttgctccgttgagatatatttctttttcaaatgctttaactagataactgactacattattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211297098|gb|FL187060.1|FL187060
EST:     TTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATA-STTAAAGAATGTATAC
genomic: TTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60358894|gb|DN225867.1|DN225867
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|211377302|gb|FL186755.1|FL186755
EST:     GTTT-ACAGTGACAAGGACCCAACCTATGACCTCA-CTTTTAAGGAG-AG                         AATAATGATGGTTCACAGAAGATA
genomic: GTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTT-AAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATA
EST: gi|31360635|gb|CD444992.1|CD444992
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60358699|gb|DN225672.1|DN225672
EST:     GTTTTACAGTGACAAGGACCAAACCCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: GTTTTACAGTGACAAGGACCAAA-CCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60399892|gb|DN232702.1|DN232702
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|61118137|gb|DN559098.1|DN559098
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67017771|gb|CO446520.1|CO446520
EST:     CAACTTTTAGGAGGAG                         AATAATGATGGTTCACAGAAGAT-TCTGGCGATAGCTTAAAGAATGTATAC
genomic: CAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31357253|gb|CD441610.1|CD441610
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31355741|gb|CD440098.1|CD440098
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60396341|gb|DN229210.1|DN229210
EST:     CAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: CAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|211425250|gb|FL005768.1|FL005768
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATASSTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|6020898|gb|AW065826.1|AW065826
EST:     AGTTTTACAGTGACAAGGGCCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31357159|gb|CD441516.1|CD441516
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|28931188|gb|CB334549.1|CB334549
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67026276|gb|CO455025.1|CO455025
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|5268740|gb|AI770704.1|AI770704
EST:     AGTTTTACAGTGACAAGGACCAAACATATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60351176|gb|DN218149.1|DN218149
EST:     TTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: TTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31353535|gb|CD437892.1|CD437892
EST:     TTTTACAGTGACAAGGACCAAACCTATGACCCCTCA-CTTTA-GGAGGAG                         AAATA-TGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATA
genomic: TTTTACAGTGACAAGGACCAAACCTATGACC--TCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAA-TAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATA
EST: gi|67022401|gb|CO451150.1|CO451150
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31352214|gb|CD436571.1|CD436571
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60354428|gb|DN221401.1|DN221401
EST:     CTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: CTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|213179295|gb|FM184302.1|FM184302
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31350878|gb|CD435235.1|CD435235
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67018108|gb|CO446857.1|CO446857
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31361447|gb|CD445804.1|CD445804
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|111991147|gb|EE332203.1|EE332203
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|21987719|gb|BQ779247.1|BQ779247
EST:     AGTTTTACAGTGACAAGGACCAAACATATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60347267|gb|DN214240.1|DN214240
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|28187817|gb|CB179427.1|CB179427
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67022560|gb|CO451309.1|CO451309
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60348392|gb|DN215365.1|DN215365
EST:     CCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: CCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67018993|gb|CO447742.1|CO447742
EST:     GACCAATCTTATGACCTCAACTTTAAGGAGGAG                         CATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: GACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|8367282|gb|BE050227.1|BE050227
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|5928830|gb|AW056122.1|AW056122
EST:     AAACATATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67030419|gb|CO459168.1|CO459168
EST:     AGTTTTACAGTGACAAGGACCAA-CCTATGACCTCA-CTT-AAGGAGGAG                         AATA-TGATGGTTC-CAGAA
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAA
EST: gi|67010780|gb|CO439529.1|CO439529
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60399427|gb|DN232239.1|DN232239
EST:     AAACATATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|33093609|gb|CF053603.1|CF053603
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60338715|gb|DN205688.1|DN205688
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60394184|gb|DN227054.1|DN227054
EST:     GTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: GTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60398686|gb|DN231502.1|DN231502
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|14204058|gb|BG837735.1|BG837735
EST:     AGTTTTACAGTGACAAGGMCCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|33094991|gb|CF054985.1|CF054985
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60354307|gb|DN221280.1|DN221280
EST:     TATGACCTCAACTTAAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCT-GCGGATAGCTTAAAGAATGTATA
genomic: TATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGC-GATAGCTTAAAGAATGTATA
EST: gi|31351690|gb|CD436047.1|CD436047
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67015783|gb|CO444532.1|CO444532
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60355692|gb|DN222665.1|DN222665
EST:     ATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: ATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67022155|gb|CO450904.1|CO450904
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60340948|gb|DN207921.1|DN207921
EST:     TTTAAGGAGGAG                         AAAAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: TTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31362206|gb|CD446563.1|CD446563
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67016494|gb|CO445243.1|CO445243
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67015750|gb|CO444499.1|CO444499
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60352137|gb|DN219110.1|DN219110
EST:     CAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: CAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|67023954|gb|CO452703.1|CO452703
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60354120|gb|DN221093.1|DN221093
EST:     ACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: ACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60356144|gb|DN223117.1|DN223117
EST:     AGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|166601498|gb|EG166655.1|EG166655
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|21843176|gb|BQ703742.1|BQ703742
EST:     AGTTTTACAGTGACAAGGACCAAACATATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60344066|gb|DN211039.1|DN211039
EST:     TTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: TTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|14204206|gb|BG837883.1|BG837883
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|51592397|gb|CV071543.1|CV071543
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60348526|gb|DN215499.1|DN215499
EST:     TTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: TTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|211301118|gb|FL169206.1|FL169206
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31352835|gb|CD437192.1|CD437192
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31352118|gb|CD436475.1|CD436475
EST:     GTTTTACAGTGACAAGGACCTCAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: GTTTTACAGTGACAAGGACC-AAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|84980804|gb|DW531153.1|DW531153
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|31350995|gb|CD435352.1|CD435352
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|76281561|gb|DV021129.1|DV021129
EST:     AGTGACAAGGACCAAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTGACAAGGACC-AAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|60341398|gb|DN208371.1|DN208371
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|211377301|gb|FL186754.1|FL186754
EST:     AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTNAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATA-CTTAAAGAATGTATAC
genomic: AGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
EST: gi|24765699|gb|CA400858.1|CA400858
EST:     CTTTAAGGAGGAG                         AATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC
genomic: CTTTAAGGAGGAGgtagaccatt ... ttttttgtagAATAATGATGGTTCACAGAAGATATCTGGCGATAGCTTAAAGAATGTATAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGACCAAACCTATGACCTCAACTTTAAGGAGGAGgtagaccattgttttctttctgtgaacaagttaataaacttgccagacatgtccctaactaaacattctgttttttttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG