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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCTCTCTTGATAAGgtatgcactcttcattgtaatattttaagagttcttttattgtcttagattcaggtgtttaacgtttagttttttctcaaatgacag

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 12
CGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCTCTCTTGATAAGgtatgcactcttcattgtaatatt-------ttaagagttc-ttttattgtcttagattcaggtgtttaac--gtttagttttttctcaaatgacag
 || || || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |   |||   ||| ||  ||        | | ||||| |||||||     |||||||||| ||||    ||| |  | ||| |||||||||||
TGGCATCTTCCCTTATGTACTTAAACTGCTTCAAACAAGTGCAATGGAGTTGCGCCAAATTCTTGTGTTCATATGGACAAAAATTCTCTCTCTTGATAAGgta-gtgttctatgttgaaaacttgaaatctctgacagttcattttatttctcaagattcaggtatttacttagttgatctgtttttcaaatgacag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 11
CGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCTCTCTTGATAAGgtatgcactcttcattgtaatatt-------ttaagagttc-ttttattgtcttagattcaggtgtttaac--gtttagttttttctcaaatgacag
 || || || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||  |   |||   ||| ||  ||        | | ||||| |||||||     |||||||||| ||||    |||    | ||| |||||||||||
TGGCATCTTCCCTTATGTACTTAAACTGCTTCAAACAAGTGCAATGGAGTTGCGCCAAATTCTTGTGTTCATATGGACAAAAATTCTCTCTCTTGATAAGgtg-gtgttctatgttgaaaacttgaaatctctgacagttcattttatttctcaagattcaggtatttacttagttgctctgtttttcaaatgacag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 12
CGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCTCTCTTGATAAGgtatgc------actcttcattgtaatattttaagagttcttttattgtcttagattca---ggtgtttaacgttt--agttttttctcaaatgacag---
 ||||||||||| ||||| || || ||| | |||||||   |    || ||  | ||||||||||| |||||||||||||| || ||  | ||||||||||||| |         || |||| |  | ||| |  |  | ||| | | | | ||  | |    ||   ||   ||   ||   |    || |||       
TGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTGCACTTGATAAGgtatacttagaagtcctccattatt-tttttcacaatatatttgagtatttgaggatgacaaagttgctactattagaagacatgctccatatgttcttga

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 12
lower sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
CGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCTCTCTTGATAAGgtatgcactcttcattgtaatattttaagagttcttttatt-gtcttagattcaggtgtttaacgtttagttttttctcaaatgacag-------------
 |||||||| || ||||| || || ||||| ||| |||  || |  || ||||| ||||||||||| |||||||||||||| |||||  ||||||| ||||| |    |||   |    ||| ||||    || |||| ||     ||| |  |  |||      | |   |   | | || ||                 
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgt-tgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca