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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTTGCCTCCAGCTCAAACCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACATCTCAAGTATACGAACTTTCTAGTTACTTTCTTCACAAGgtaagtgatcaattttgttgacttcaaagatctgtaagggttctttcttttttttcttaatataatgatattcagctctcctgcttgttttagagaaaaa...

Basic information

species Zea mays
transcript GRMZM2G045259_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 12
TTCAGTTGCCTCCAGCTCAAACCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACATCTCAAGTATACGAACTTTCTAGTTACTTTCTTCACAAGgtaagtgatca---attttgttgacttcaaagatctgtaagggttctt-tcttttttttcttaata--taatgatattcagctct--cctgcttgttttagagaaaaa
||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||||||||  | |||||| | ||||| ||   |||||||||||||||||||| | ||      |  |  |    |  |  || | |     ||| | ||| |  ||  ||| ||   ||  ||| ||||||||  |||  |||   |         
TTCAGTTTCATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGgtaaataattgcgtgtcatcctactattgagtatgtattttttttcctatctgtggttggttactaatcaagcatactcagctctatcctaattgccatc--------

upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 12
TTCAGTTGCCTCCAGCTCAAACCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACATCTCAAGTATACGAACTTTCTAGTTACTTTCTTCACAAGgtaagtg--atcaattttgttgacttcaaag-atctgtaagggttctttcttttttttcttaatataatgatattcagctctcctgcttgttttagagaaaaa------------------------------------------------------------------------
    || || ||  |   |||  |||||||  ||||||||||||| ||||||||||||||  | ||||| || || |||||    || ||||||||||||||  ||   ||   ||||||| |   ||  | ||   ||    |  || | | | |     |||  |||   ||     |   |      | ||| |     |                                                                        
CAGTGTAGCGTCTTGTCAAAATTTGTGGGCGCTAATTATGGATGCAGGCACTGGTTTTACTGCACAAGTTTATGAGCTTTCACCCTATTTTCTTCACAAGgtgcgtctcatttcttttgtttaacccatggcatacatatttatctttacatgtgtcatgcaattaaatttcatcagtatgatcgaggcatattacaaggctacttctttcagcttactgttatacatttaattttaacaagtgatcaattaatctttttttgttctgtctatag