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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtcccttgcgttaatttgctgtgtctttttttttttggattgtttcgtcgctcttccccaccacagcaaaatgtcaagcatggtatcacatttgctaaccctgaaaagggggctaacaattattgacatattattgacgccatgtcag

Basic information

species Zea mays
transcript GRMZM2G045241_T07
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76294030|gb|DV033598.1|DV033598
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|5871498|gb|AW017969.1|AW017969
EST:     AGAGGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: AGAGGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|47961462|gb|CN844171.1|CN844171
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|78081455|gb|DV509867.1|DV509867
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|211252583|gb|FL430692.1|FL430692
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|76908596|gb|DV163020.1|DV163020
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|211489896|gb|FL473954.1|FL473954
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|15080211|gb|BI388982.1|BI388982
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|211489897|gb|FL473955.1|FL473955
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|78117446|gb|DV535833.1|DV535833
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
EST: gi|211260967|gb|FL474891.1|FL474891
EST:     GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG                         GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA
genomic: GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCGgtatgtccct ... gccatgtcagGTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCA