1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AATCCTCCAAGAAACTTATGGGAGCTTATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAGgtacaccaatagactgcttctatgctgttgggacatgatatctattctaagtactaatttcacactttttatgctacatctagctttgttgctttacatgatttgcgcaatgacagttctcaatattaacatggtaccattctgcttctttttgttag
species | Zea mays |
transcript | GRMZM2G045241_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAG CAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTAEST: gi|78081455|gb|DV509867.1|DV509867
genomic: TATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAGgtacaccaat ... tttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
EST: GGAGCTTATTCTTAATGCTTCATTTGAAGCAATCGATTTGATCCAG CAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTAEST: gi|78117446|gb|DV535833.1|DV535833
genomic: GGAGCTTATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAGgtacaccaat ... tttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
EST: ATTTGATCCAG CAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
genomic: ATTTGATCCAGgtacaccaat ... tttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCTCCAAGAAACTTATGGGAGCTTATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAGgtacaccaatagactgcttctatgctgttgggacatgatatctattctaagtactaatttcacactttttatgctacatctagctttgttgctttacatgatttgcgcaatgacagttctcaatattaacatggtaccattctgcttctttttgttag
- - - - - - - - - - GGAGCT
- - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA