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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGCCTGAAGCTTGAACAGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaatttctatctaaccataggctcacatgttttcttcttcttgttcctcatcaagagcaggggaaacaaaaaaacttcag

Basic information

species Zea mays
transcript GRMZM2G044629_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044629_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 13
GAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGCCTGAAGCTTGAACAGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaatttctatctaaccataggctcaca-tgtttt---cttcttcttgt---tcctcatcaagagcaggggaaacaaaaaaacttcag---------------
|||||||||||||||||||||||||| | | | |||| ||||||||||||||| |||||||||||| ||||  |||||||| ||||| |||||||| |||||   | ||   |     | ||   || | |   || |     || |  |||   |  |  | | ||    | |||||  |      |                  
GAAGAAGATCCCTTCCATCCATGGGTACGCAATGGGCTTGAAGCTTGAACAGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAGgttcaacttctcagtcgcctatgctcttataacattctagatgtcatgctgtgtctttttgttatgattttgagaaactcatcggtatacatatctgaaaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149100895|gb|EE186990.2|EE186990
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|71429564|gb|DR810614.1|DR810614
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|166514172|gb|EG308864.1|EG308864
EST:     CGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: CGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|211094109|gb|FL460556.1|FL460556
EST:     NGTTTATATTCGACGCTTTCACATACTGCCCGTCCACGGCACTTTTGGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: -GTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|166625031|gb|EG168092.1|EG168092
EST:     GTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: GTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|37378055|gb|CF625683.1|CF625683
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|211406602|gb|FL094198.1|FL094198
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|78115802|gb|DV534190.1|DV534190
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|149014876|gb|EE044587.2|EE044587
EST:     AGTTTATATTGGACGCCTTCACATACTCCCCGTCCACGGCACTTTTGGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|94477176|gb|EB706134.1|EB706134
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|211119105|gb|FL479440.1|FL479440
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|91052248|gb|EB162666.1|EB162666
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|24769018|gb|CA404147.1|CA404147
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTTGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|32863501|gb|CF003183.1|CF003183
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|71772484|gb|DR970416.1|DR970416
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|16926697|gb|BM079765.1|BM079765
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
EST: gi|14244148|gb|BG841843.2|BG841843
EST:     AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAG                         GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG
genomic: AGTTTATATTCGACGCCTTCACATACTCCCCGTCCACGGCACTTTTCGAGgtcagaattt ... aaaacttcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAGCGGCGCAACG