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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttggattatatagtcgcaatgctttcgtcttccaaagcttggcaaatcttgactgattactgacgcgattacttcaactttgcag

Basic information

species Zea mays
transcript GRMZM2G044027_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g16980.2 (Oryza sativa), 5'ss of exon 11
GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttggattatatagtcgcaatgctttcgtcttccaaagcttggcaaatcttgactgattactga-cgcgattacttcaactttgcag
|||||||||||||||||||||||||||||||||||||||||| ||| || || ||   || ||    | |     |||||  |  ||     |||  |  |  | || |       | |||  || ||||||
GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaat-atcctgttgccgaacatca---ttccatgggatgtt---tctgaatggcatgctaagtttccctgcttttaccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83278385|gb|DV942393.1|DV942393
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|21393785|gb|BQ538215.1|BQ538215
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|16926688|gb|BM079756.1|BM079756
EST:     AGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: AGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32841175|gb|CD980856.1|CD980856
EST:     GTGAATTCACCATGCCGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCG
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCG
EST: gi|32165002|gb|CD670320.1|CD670320
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32841645|gb|CD981326.1|CD981326
EST:     CTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: CTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14206834|gb|BG840512.1|BG840512
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32909997|gb|CF014809.1|CF014809
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCG
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCG
EST: gi|71761214|gb|DR959151.1|DR959151
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|5922174|gb|AW055444.1|AW055444
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATACCAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|7216734|gb|AW562856.1|AW562856
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37397262|gb|CF635926.1|CF635926
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|211032180|gb|FL277400.1|FL277400
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACA
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACA
EST: gi|5058888|gb|AI737364.1|AI737364
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32850262|gb|CD989943.1|CD989943
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|9952482|gb|BE639065.1|BE639065
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32830694|gb|CD970372.1|CD970372
EST:     TTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14202329|gb|BG836006.1|BG836006
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAAAACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|44901196|gb|CK827741.1|CK827741
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|148951040|gb|EC896694.2|EC896694
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|149097828|gb|EE183755.2|EE183755
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|149107238|gb|EE189121.2|EE189121
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|16919271|gb|BM074112.1|BM074112
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32850554|gb|CD990235.1|CD990235
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|13149594|gb|BG319916.1|BG319916
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37390281|gb|CF632369.1|CF632369
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14243013|gb|BG840180.2|BG840180
EST:     TGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: TGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|40303252|gb|CK347639.1|CK347639
EST:     TCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACATTGACGATGACCGAGAACACTCCTGATGAT
genomic: TCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|149066781|gb|EE286923.2|EE286923
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|60359268|gb|DN226241.1|DN226241
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|148945877|gb|EC891169.2|EC891169
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|5069943|gb|AI737908.1|AI737908
EST:     GTGAATTCCCCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32847162|gb|CD986843.1|CD986843
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACCCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32847141|gb|CD986822.1|CD986822
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|166541132|gb|EG308414.1|EG308414
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAAACCCAGATATAACAGTGACGATGACCGAGAACACTCC
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAA-CCCAGATATAACAGTGACGATGACCGAGAACACTCC
EST: gi|37377691|gb|CF625472.1|CF625472
EST:     GTGAATTCACCATGTTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32866186|gb|CF005868.1|CF005868
EST:     GTGAACTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37400341|gb|CF637522.1|CF637522
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCTTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|16926028|gb|BM079096.1|BM079096
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14243445|gb|BG841176.2|BG841176
EST:     GGAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GGAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|5069945|gb|AI737910.1|AI737910
EST:     GTGAATTCNCCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|148944202|gb|EC889293.2|EC889293
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|148928436|gb|EE285202.2|EE285202
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37377101|gb|CF625125.1|CF625125
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32831494|gb|CD971172.1|CD971172
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|44900831|gb|CK827376.1|CK827376
EST:     GTGAATTCACCATGTTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|4730338|gb|AI649504.1|AI649504
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32840626|gb|CD980307.1|CD980307
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGGGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32849987|gb|CD989668.1|CD989668
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14243824|gb|BG841478.2|BG841478
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37391875|gb|CF633182.1|CF633182
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14245099|gb|BG873681.1|BG873681
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|32916547|gb|CF021359.1|CF021359
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGGGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|211032181|gb|FL277401.1|FL277401
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCANATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|18165420|gb|BM335259.1|BM335259
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14243429|gb|BG841091.2|BG841091
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAANGGAG                         T-GATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGA
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAA-GGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGA
EST: gi|14203684|gb|BG837361.1|BG837361
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|45568706|gb|CK986190.1|CK986190
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37373887|gb|CF623268.1|CF623268
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|14244528|gb|BG840193.2|BG840193
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37387012|gb|CF630698.1|CF630698
EST:     GCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|213192508|gb|FM182601.1|FM182601
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|7242239|gb|AW574412.1|AW574412
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|40334263|gb|CK368333.1|CK368333
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|37398452|gb|CF636539.1|CF636539
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|211032182|gb|FL277402.1|FL277402
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|166419250|gb|EG304902.1|EG304902
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGA
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGA
EST: gi|166457737|gb|EG161293.1|EG161293
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGA
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGA
EST: gi|6601652|gb|AW256048.1|AW256048
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|5069937|gb|AI737902.1|AI737902
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: gi|83279397|gb|DV943405.1|DV943405
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 442

GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGATCCCCGCCAGAGGAAGCCGGACATCACCAAGGCAAAGGAAGTTCTAGGGT


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 694

GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGATCCCCGCCAGAGGAAGCCGGACATCACCAAGGCAAAGGAAGTTCTAGGGT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 1086

GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGATCCCCGCCAGAGGAAGCCGGACATCACCAAGGCAAAGGAAGTTCTAGGGT


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 1301

GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGATCCCCGCCAGAGGAAGCCGGACATCACCAAGGCAAAGGAAGTTCTAGGGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttggattatatagtcgcaatgctttcgtcttccaaagcttggcaaatcttgactgattactgacgcgattacttcaactttgcag

- - - - -  ATGCTG
- - - - - -  GCTGGA
- - - - - - - - - - - - - - - - -  AAGGAG