1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGCTGGATAGAGCTACTATTAATGCATCTGTGAGGAAAACCAATAGATTGGTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccactctccctccctccctccttcccaatgtataatgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcag
species | Zea mays |
transcript | GRMZM2G043198_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|6056687|gb|AW091092.1|AW091092
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|60352148|gb|DN219121.1|DN219121
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|32829371|gb|CD969049.1|CD969049
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|148928998|gb|EC874173.2|EC874173
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|76282095|gb|DV021663.1|DV021663
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|67038743|gb|CO464998.1|CO464998
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|60396979|gb|DN229798.1|DN229798
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|463331|gb|T18298.1|T18298
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGNGAGEST: gi|15082843|gb|BI389527.1|BI389527
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|4610194|gb|AI601033.1|AI601033
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: AAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|6031329|gb|AW076186.1|AW076186
genomic: AAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|24765246|gb|CA400405.1|CA400405
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|60672217|gb|DN474985.1|DN474985
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: ACCGTAGAAGAANGCTTCCCTCAACATGGGGATTGGTGCGGAAAATATGEST: gi|14206753|gb|BG840431.1|BG840431
genomic: ACCGTAGAAGAAGGCTTCCCTCAACATGGG-ATTGGTGCGGAAA-TATG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|6828052|gb|AW331695.1|AW331695
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|60340970|gb|DN207943.1|DN207943
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|5566870|gb|AI881781.1|AI881781
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGEST: gi|44900498|gb|CK827043.1|CK827043
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGTGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGGATAGAGCTACTATTAATGCATCTGTGAGGAAAACCAATAGATTGGTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccactctccctccctccctccttcccaatgtataatgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG