1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTATTAGCAGGCCCAGCTCCCCAAACCTTAATTAGCAACTCTAGTTTTGGTGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcatattttcccgtcataatcttgctctttagtaccttctgttttgcgtgctgtgctaatttttgtttcaatcag
species | Zea mays |
transcript | GRMZM2G043056_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAACEST: gi|60357017|gb|DN223990.1|DN223990
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
EST: TGTTCCTTCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATAATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAACEST: gi|60355844|gb|DN222817.1|DN222817
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAACEST: gi|60338909|gb|DN205882.1|DN205882
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAACEST: gi|31355485|gb|CD439842.1|CD439842
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCEST: gi|78115032|gb|DV533420.1|DV533420
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCC
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAACEST: gi|211019067|gb|FL469808.1|FL469808
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAACEST: gi|31361667|gb|CD446024.1|CD446024
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
EST: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAA GCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcat ... tttcaatcagGCCATTTCATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCCGAGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTAGCAGGCCCAGCTCCCCAAACCTTAATTAGCAACTCTAGTTTTGGTGTTCCTCCACAGCAGCCTCACCAGCTCTATCAATCAGCCGCACATCCAAgtaattgcatattttcccgtcataatcttgctctttagtaccttctgttttgcgtgctgtgctaatttttgtttcaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC