Sequence
atgc intronic sequence ATGC exonic sequenceCAGCCAAAATAAAGTCCATAAAGAAAACAATGCGGTCTTCCACCGCTTTAGCTTTCAAGGATGAACTCAAGGCCCGGAAACGTGTTCTTCGCAGGCTGGGgtattgcattttattctgacataaattgattctttgccaggttttgctggtttggtacttttaagatgaagtgccctacttacatatataatccccgacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 12
CAGCCAAAATAAAGTCCATAAAGAAAACAATGCGGTCTTCCACCGCTTTAGCTTTCAAGGATGAACTCAAGGCCCGGAAACGTGTTCTTCGCAGGCTGGGgtattgcattttattctgacataaattgattctttgccaggttttgctggtttggtacttttaagatgaagtgccctacttacatatataatccccgacc------
|| ||||||||||| |||| || | |||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| || |||||||| ||| ||| || | | | | | || | | ||||| ||||| | || | |||| ||| | ||| | || || || || |
CAACCAAAATAAAGGCCATTAAAAGAACAATGCGGTCTTCCACTGCTTTAGCCTTCAAGGATGAGCTCAAGGCCCGAAAACGGGTTCTTCGTAGACTGGGgtaatgc-tttgatgcatcctttgacacgtatattctgataatatgctgatttggaa--ttcagaatga-gtgtc-tacatgtcta-atgattgccatgcataaga
upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 12
CAGCCAAAATAAAGTCCATAAAGAAAACAATGCGGTCTTCCACCGCTTTAGCTTTCAAGGATGAACTCAAGGCCCGGAAACGTGTTCTTCGCAGGCTGGGgtattgcattttattctgacataaattgattctttg-ccaggttttgctggtttggtacttttaagatgaagtgccctacttacatatataatccccgacc
||||||| || ||||| || |||| ||||||||| |||||||| || || |||||||| |||||||||||||| ||||||| |||||||| | ||| ||||| || | ||| | || | | | | | ||| | || ||| | |||| | | | | ||| | | | | |
CAGCCAAGATCAAGTCAATTAAGAGAACAATGCGCTCTTCCACTGCATTGGCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaatgaaattt-ctatgtttcatttcaaccttagaactaggaaaagatgtttttttctttttttggttgtggatgttcctttcctggcagctgcttaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166565072|gb|EG205900.1|EG205900EST: CCCGGAAACGTGTTCTTCGCAGGCTGGG GTAATGTTACGAGTGATGATGTTGTGGAAGTGAAGGGCAAAGTGGCGTGTG
genomic: CCCGGAAACGTGTTCTTCGCAGGCTGGGgtattgcatt ... tttatttcagGT-ATGTTACGAGTGATGATGTTGTGGAAGTTAAGGGCAAAGTGGCGTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCCAAAATAAAGTCCATAAAGAAAACAATGCGGTCTTCCACCGCTTTAGCTTTCAAGGATGAACTCAAGGCCCGGAAACGTGTTCTTCGCAGGCTGGGgtattgcattttattctgacataaattgattctttgccaggttttgctggtttggtacttttaagatgaagtgccctacttacatatataatccccgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG