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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaactgttgtcagagcacatcacgttattgctgtgaacttcactattggtgcaccaccagacttttataaaatattcgatcttaattccag

Basic information

species Zea mays
transcript GRMZM2G040720_T06
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040720_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g34750.1 (Oryza sativa), 5'ss of exon 14
AGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaa-actgttgtcagagcacat-cacgttat--tgctgtgaacttcac----tattggtgcac-caccag--------acttttataaaatattcgatcttaattccag
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AAACGCGTTTAAAGCAGGACCTGAACTCTCTGGGAATGGATGATATATCTTCGTTTATGGAGTCCTTGCCTCCTGACTTTCTCACCATACTTCGAACAGAgtaagcaatatttttgtcagtgcataagcatgttacactgctttcgtctttacccatttttgctgcttacacttgtgatatttacttcagtggactact-gaggtcaattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9824900|gb|BE574997.1|BE574997
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGGCCATTTTA
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTA