Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaactgttgtcagagcacatcacgttattgctgtgaacttcactattggtgcaccaccagacttttataaaatattcgatcttaattccag

Basic information

species Zea mays
transcript GRMZM2G040720_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040720_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g34750.1 (Oryza sativa), 5'ss of exon 14
AGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaa-actgttgtcagagcacat-cacgttat--tgctgtgaacttcac----tattggtgcac-caccag--------acttttataaaatattcgatcttaattccag
| | |||| | ||| ||||| | |||||||| || ||||||||||||||||| |||||||| |||||||| || |||||      |||||| ||||||||||||| || | | ||||||| ||| |  || ||||   |||| |   ||| ||    | ||| |||   |||  |        ||||   |  | || | ||  | ||||  ||
AAACGCGTTTAAAGCAGGACCTGAACTCTCTGGGAATGGATGATATATCTTCGTTTATGGAGTCCTTGCCTCCTGACTTTCTCACCATACTTCGAACAGAgtaagcaatatttttgtcagtgcataagcatgttacactgctttcgtctttacccatttttgctgcttacacttgtgatatttacttcagtggactact-gaggtcaattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931165|gb|CF035977.1|CF035977
EST:     TCATTTATGGAATCCTTGCCACCGGACCTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|60338335|gb|DN205308.1|DN205308
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|37381459|gb|CF627617.1|CF627617
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|37390531|gb|CF632497.1|CF632497
EST:     CCGGACTTTTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: CCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|9824900|gb|BE574997.1|BE574997
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGGCCATTTTA
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTA
EST: gi|60341736|gb|DN208709.1|DN208709
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|71305468|gb|DR788864.1|DR788864
EST:     ATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: ATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|60344633|gb|DN211606.1|DN211606
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|40336243|gb|CK370313.1|CK370313
EST:     TGCCACCGGACTTTTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
EST: gi|86474242|gb|DY240612.1|DY240612
EST:     TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGA                         CGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG
genomic: TCATTTATGGAATCCTTGCCACCGGACTTCTATGTCATACTACGAACAGAgtaaggaaac ... ttaattccagCGGACTATTGAGGTCCATTTTAGGGAATCTTGGGGCACCACGCCATGTTCG