Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGTGCTGGTTTCAAGAGCTGCTTTTGTTTTCCCACTATCCTTTGTATCAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtctttaacttagcaacatcttaacttcttatgttctcttgaaacagttgttatgttccttacatgatattggtcattcag

Basic information

species Zea mays
transcript GRMZM2G037342_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037342_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 10
CTTGGTGCTGGTTTCAAGAGCTGCTTTTGTTTTCCCACTATCCTTTGTATCAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtctttaacttagcaacatcttaa-cttcttatgttctcttgaaacag--ttgttatgttccttacatgatattggtcattcag
||||||||||||  |||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||  | | |||||||| ||| ||| |||||| || ||| ||| | |||||| |||||||  |||  ||| |||||||  ||  |   | | | ||| ||||  |||| | ||| ||||||
CTTGGTGCTGGTCGCAAGAGCTGCTTTTGTTTTCCCACTATCTTTTTTGGCAAATTTGACCAAAAAAACTGAAGAGGGAAAGATCTCTATTAAGCAGCAAgtgagtgttttatttagcagcatcttaggcttgctatcttctcttataaggggactttcaggttactta--tgatgtgggttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301742|gb|DR786939.1|DR786939
EST:     CAAGAGCTGCTTTTGTTTTCCCACTATCCTTTGTATCAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTG
EST: gi|87152007|gb|DY396796.1|DY396796
EST:     TCCCACTATCCTTTGTATCAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG        
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagG
EST: gi|19058280|gb|BM736947.1|BM736947
EST:     CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: gi|110481107|gb|EE010953.1|EE010953
EST:     AAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTG-TTGGTGGGCGGGTTTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: AAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: gi|76931825|gb|DV172864.1|DV172864
EST:     CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: gi|76921050|gb|DV168432.1|DV168432
EST:     CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: gi|20300776|gb|BQ163719.1|BQ163719
EST:     CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: gi|18964390|gb|BM660978.1|BM660978
EST:     CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: gi|78119305|gb|DV537689.1|DV537689
EST:     CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG                         GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG