Sequence
atgc intronic sequence ATGC exonic sequenceTGTACATTTGGTGGAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAGgtaaattctagaaataaatgtaatgacatgcagtgttgtattttttgatatacacttcatgctatcaaactcctggtcacactgctatggacaggtacaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os04g23890.1 (Oryza sativa), 5'ss of exon 13
TGTACATTTGGTGGAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAGgtaaattctagaaataaatgtaatgaca-tgcagtgttgt----attttttgatatacacttcatgctatcaaact----cctggtcacactgctatggacaggtacaa-----------------------------
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TGTGCACTTGGTTGAGCTACAGGGAAGTGGTGAATTATTTGCAATGAAGGCCATGGACAAGTCAGTGATGTTGAACCGCAACAAGgtaattttaattcatgaacatgagcatgctgttatgttgttattgtatttccatccatgctggatgtgatcaacctttttcctgctgttgctagtacgataaggtgcaagaattacttcaactccctctctcttgcag
upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 13
TGTACATTTGGTGGAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAGgta-aattctagaaataaatgtaatgacatgcagtgttgtattttttgatatacacttcatgc-tatcaaactcctggtca--cactgctatggacaggtacaa------------------------------------------------------------
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TGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGgtctgacactt--aatgaaaaccttgatttggggcattttatattt-ggtgtgaactctatgcacactcatgtgtttcttagttcctgcaacagagacattcattcaaccgcagtgatcaaatatgtgattgaaggatctaatgtcattgtgaaccatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71434885|gb|DR815935.1|DR815935EST: TATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAG GTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCT
genomic: TATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAGgtaaattcta ... aaatgtgcagGTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTACATTTGGTGGAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAGgtaaattctagaaataaatgtaatgacatgcagtgttgtattttttgatatacacttcatgctatcaaactcctggtcacactgctatggacaggtacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataaa