Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTCCCTCGTTGAAGGATCTTCGATGGAACTGTACTGGGAGAACCTCAAGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggttattttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaagaaggcaaatccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 12
CAAGTCCCTCGTTGAAGGATCTTCGATGGAACTGTACTGGGAGAACCTCAAGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggttat-tttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaaga-aggcaaatcc-gcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccag
||| | || ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||| ||| |||| ||||||| ||||||||||||| |||| ||| | || || | |||| || |||| ||| |||| ||| || | ||||| | | || | ||| | | | || | |||||||| || | || || | ||||||| | || | || |||
CAAAACTCTTGTTGAAGGATCTTCGATGGAACTCTATTGGGAGAATCTCAAGAAGTCATGGATATGGGAAGAGCTTTATAGAGCTCGGAATTACAGACCAgtatgtgattatgtttgttacagacttcct-gaaca---tttattttg---tctaattaagtattccgtcatacaagcttttgaagtgaggatatgcagtttctgttttttcctttctgaagctattgagcagacag---atttatttatattctgttacag
upper sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 12
-CAAGTCCCTCGTTGAAGGATCTTCGATGGAACTGTACTGGGAGAACCTCAAGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggttattttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaagaaggcaaatccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccag
| || | || | ||||| || |||||| || ||||| || | ||| |||||||||||||||||||||||||||||| ||||||| | || || ||| ||| | | | | || ||| |||| | | ||| | | | || |||| || ||| ||| | | || || |
TGATGTACTTCAT-GAAGGCTCGAGCATGGAAAAATATTGGGATGGTCTAAGGAATTCATGGATATGGGAAGAACTTCATAAAGCTCGGAATTACCGTCCGgttagtgagacaattaagtgtattctctt--aactttcttaatcatcctttctcacttagt----ggtagtgtatact-acaagggctgccttgtacatattctatt----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353246|gb|CD437603.1|CD437603EST: AGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCA GCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
genomic: AGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggtt ... tttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTCCCTCGTTGAAGGATCTTCGATGGAACTGTACTGGGAGAACCTCAAGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggttattttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaagaaggcaaatccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC