1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAGgtcagtttggtctatgtatctgttcttccactgaattgtagtggttttgaattatcctcgatatctttatcaaatgcctctctaacactggctctgatcttttgtgctatcgaagggctgtggtgaccgccaaccaatccagttctgaactaacattgttgctctatctgcgtttcag
species | Zea mays |
transcript | GRMZM2G031572_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG GACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGCTGCTATTTEST: gi|211191456|gb|FL473730.1|FL473730
genomic: GGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAGgtcagtttgg ... tgcgtttcagGACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGCTGCTATTT
EST: GGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG GACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGCTGCTATTTEST: gi|71441297|gb|DR822347.1|DR822347
genomic: GGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAGgtcagtttgg ... tgcgtttcagGACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGCTGCTATTT
EST: GGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG GACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGCTGCTATTTEST: gi|166651878|gb|EG116747.1|EG116747
genomic: GGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAGgtcagtttgg ... tgcgtttcagGACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGCTGCTATTT
EST: ACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG GACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGC
genomic: ACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAGgtcagtttgg ... tgcgtttcagGACATGACAAGGAGCCATGGCTGGGAAGCAGATGGAGCATAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAGgtcagtttggtctatgtatctgttcttccactgaattgtagtggttttgaattatcctcgatatctttatcaaatgcctctctaacactggctctgatcttttgtgctatcgaagggctgtggtgaccgccaaccaatccagttctgaactaacattgttgctctatctgcgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG