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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGGTTCTTTGTAGGGTTTGCTACGAGGGAGAGATATGCATGGTGCTTCTTCCCTGCCGGCACAGAACTTTATGCAAgtatgattcagtcttttttgttcttttcatatatgcccttcctagctagttaggcaatgcttgaaattgttactacattgtttctgacggtacattttctttattag

Basic information

species Zea mays
transcript GRMZM2G024690_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024690_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 13
GAGAAGGTTCTTTGTAGGGTTTGCTACGAGGGAGAGATATGCATGGTGCTTCTTCCCTGCCGGCACAGAACTTTATGCAAgtatgattc-agtcttttttgttcttttcatatatgcccttcctagctagttaggcaatgcttgaaattgttactacattgtttctgacggtacattttctttattag
|||||||||||||||||| ||||||||||||| ||||||||||||||  | ||||| |||||||||||||| ||||||||||||| ||| ||||  || |          |  |||| ||| |  | |  || || |     ||| | | ||  |      | | |||  |                 
GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTACTTCCTTGCCGGCACAGAACATTATGCAAgtatgtttccagtcacttgttaagccactttggatgctcttacatgttgatttggaa----ctgacagttttgttgatggttctgtgatag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33098379|gb|CF058339.1|CF058339
EST:     GGAGAGATATGCATGGTGCTTCTTCCCTGCCGGCACAGAACTTTATGCAA                         ATCTTGTGCTGAGAAATGCAAGAAGTGTCCTATCTGCCGTGTCCCAATTGA
genomic: GGAGAGATATGCATGGTGCTTCTTCCCTGCCGGCACAGAACTTTATGCAAgtatgattca ... tctttattagATCTTGTGCTGAGAAATGCAAGAAGTGTCCTATCTGCCGTGTCCCAATTGA