1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAATTTTTGACCGTGGAATGTATGCTGGTCCTGTTGGCTGGCTTGGAGGAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaactccaaatcttttttaaacttgaacagattcgaaattgttagattttatagttacaaaacgaactttggttccag
species | Zea mays |
transcript | GRMZM2G022837_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAACEST: gi|84977577|gb|DW475999.1|DW475999
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAAC
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCAC-GACACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAAEST: gi|211331036|gb|FL445935.1|FL445935
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAG-CACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAA
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAAC
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTTTTGACCGTGGAATGTATGCTGGTCCTGTTGGCTGGCTTGGAGGAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaactccaaatcttttttaaacttgaacagattcgaaattgttagattttatagttacaaaacgaactttggttccag
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA