1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AAACAAAGAGGATATGATATGCTCCTGTGATGGTGATGGGGAAGTGCGCAGCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtatgatgttatctttatatttcatggggtcataagcttaatcattaagattttctctgatcaatcgtattttgtcgtcccag
species | Zea mays |
transcript | GRMZM2G022383_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCAEST: gi|211426280|gb|FL284121.1|FL284121
genomic: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtatgatgtt ... gtcgtcccagGCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
EST: ATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GCAGGTGCTACTCARATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCAEST: gi|76281467|gb|DV021035.1|DV021035
genomic: ATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtatgatgtt ... gtcgtcccagGCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
EST: CATGTGTTAAGTTGTTTAAAG GCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCEST: gi|211426278|gb|FL284119.1|FL284119
genomic: CATGTGTTAAGGTGTTT-AAGgtatgatgtt ... gtcgtcccagGCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGC
EST: GTTAAGGTGTTTAAG GCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCAEST: gi|60355397|gb|DN222370.1|DN222370
genomic: GTTAAGGTGTTTAAGgtatgatgtt ... gtcgtcccagGCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
EST: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
genomic: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtatgatgtt ... gtcgtcccagGCAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAAGAGGATATGATATGCTCCTGTGATGGTGATGGGGAAGTGCGCAGCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtatgatgttatctttatatttcatggggtcataagcttaatcattaagattttctctgatcaatcgtattttgtcgtcccag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT