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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttggttgtgtattgcactgtaccttttatctttaaccttcctgtcattgttgtgcgaatatgtgactcctgtatttgttcatttggttgttccag

Basic information

species Zea mays
transcript GRMZM2G020721_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020721_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 5'ss of exon 12
TGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttggttgtgtattgcactgtaccttttatctttaaccttcctgtcattgttgtgcgaatatgtgactcctgtatttgttca---tttggttgttccag
||| ||||| ||  ||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||  | |||   |||   | |  |||    ||   |||  | | | |||  |||||   ||||| |     |||  |  |   ||    ||| | ||
TGTGTACATCTGCTTACGCAACTTCACTCAAGAATTCCGGTGCTGCTCTCTCACACTATTTGCgtaagttttgtgtttgtgaagcatgttccacttttatgttggactttatcttactgtaatgcgatattgtgaatatgcaattaatgtactcttcatctgtgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472577|gb|EB701535.1|EB701535
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5847621|gb|AW000700.1|AW000700
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACTCTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5325022|gb|AI783213.1|AI783213
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5895688|gb|AW036934.1|AW036934
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5901242|gb|AW042342.1|AW042342
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5847179|gb|AW000258.1|AW000258
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|76933472|gb|DV173475.1|DV173475
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|6223805|gb|AW154936.1|AW154936
EST:     CTACTCATCTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATC
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATC
EST: gi|6227096|gb|AW155800.1|AW155800
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5895689|gb|AW036935.1|AW036935
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|86473236|gb|DY239606.1|DY239606
EST:     TTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|71762483|gb|DR960420.1|DR960420
EST:     TTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5343255|gb|AI795560.1|AI795560
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
EST: gi|5846835|gb|AI999918.1|AI999918
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGNAAAGATTACACTAGNAAACATANCATATCTCAGTTCCATTA
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGG-AAAGATTACACTAG-AAACATA-CATATCTCAGTTCCAT-A
EST: gi|32936459|gb|CF041278.1|CF041278
EST:     CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC                         CTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG
genomic: CTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGCgtaagttttg ... gttgttccagCTGGCTTGGAAAGATTACACTAGAAACATACATATCTCAGTTCCATATCTG