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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGGAGCAATTAAAGCAGCTTGTTTCGTCTATTGTAAAACCAAAAATTGTGCAGGGCAGAACTCTAAATGGGAAGGACTTTGTGTCTTTCTTGCAGCAGgtaaaatacttaatgatgtggttgctgatatgtatccgatcagttagaattattagtaacttttcctcctgtctcctgtgtttcag

Basic information

species Zea mays
transcript GRMZM2G019361_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019361_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 13
GCGGGAGCAATTAAAGCAGCTTGTTTCGTCTATTGTAAAACCAAAAATTGTGCAGGGCAGAACTCTAAATGGGAAGGACTTTGTGTCTTTCTTGCAGCAGgtaaaatacttaatgatgtggttgctgatatgtatccgatcagttagaattattagtaacttttcctcctgtctcctgtgtttcag
||||||  |||| |||||| | ||| |||| ||   || |||||||||||||||||| | |||||||||||| ||||| ||||| |||||||||||||||||| ||  ||||  |   |  ||  ||| || | ||  |||  ||||| |        | ||||  |    |||| |||||| |||
GCGGGATGAATTGAAGCAGGTCGTTGCGTCCATCACAAGACCAAAAATTGTGCAGGGGAAAACTCTAAATGGAAAGGAATTTGTTTCTTTCTTGCAGCAGgtagaacccttaccgtcattattcttgacatctctctaatccattagatt--------atttttattgacttctcttgtgttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050205|gb|EB160623.1|EB160623
EST:     TGCAGGGCAGAACTCTAAATGGGAAGGACTTTGTGTCTTTCTTGCAGCAG                         ATTCTTGAGGCTTTGAATAAAGGCGAAATTCCATCAACAGGGTCTCTAGTT
genomic: TGCAGGGCAGAACTCTAAATGGGAAGGACTTTGTGTCTTTCTTGCAGCAGgtaaaatact ... tgtgtttcagATTCTTGAGGCTTTGAATAAAGGCGAAATTCCATCAACAGGGTCTCTAGTT