1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTGAATACGATGGAATACTCAACCCAACATTTACTGAAGGTCCGTTTGAGCTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctatctgctagttttcaggcaatgacataagtaaaacagaatacatatagccacttcattttttcagtttctttatggaaccaatcaggactgactgggcttgcttttcttttatatgaag
species | Zea mays |
transcript | GRMZM2G019358_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|211503640|gb|FL133352.1|FL133352
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|211503639|gb|FL133351.1|FL133351
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|211501308|gb|FL133349.1|FL133349
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|60352340|gb|DN219313.1|DN219313
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|211501307|gb|FL133348.1|FL133348
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGACCCACCCCGGTTEST: gi|148936819|gb|EC880960.2|EC880960
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTCCAAGCCCTGAAAGACCGGGGTTEST: gi|211503638|gb|FL133350.1|FL133350
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAATACGATGGAATACTCAACCCAACATTTACTGAAGGTCCGTTTGAGCTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctatctgctagttttcaggcaatgacataagtaaaacagaatacatatagccacttcattttttcagtttctttatggaaccaatcaggactgactgggcttgcttttcttttatatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA