1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATGAAAGGGAGCTCAAGAAGCAGAAGCGGAAGCAGTCAAACAGAGAGTCCGCTCGCAGATCCCGGCTGCGCAAACAGgtgctgtgcaaccctcgtgctgacacccaccctgctagctgaatttcatcttctaagagacccaagagaaatttcgtccaacgctttcatgggtcttgttcggttgttccag
species | Zea mays |
transcript | GRMZM2G019106_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAAGCAGTCCAACAGAGAGTCCGCTCGCAGATCCCGGCTGCGNCAA-CAG GCTGAGTGCGAAGAGCT-GGGCAACGTGCTGAG-CTCTGAGGTCG-AGAAEST: gi|37375375|gb|CF624118.1|CF624118
genomic: GAAGCAGTCAAACAGAGAGTCCGCTCGCAGATCCCGGCTGCG-CAAACAGgtgctgtgca ... gttgttccagGCTGAGTGTGAGGAGCTTGGGCAACGTGCTGAGGCTCTGAGGTCGGAGAA
EST: GGAAGCAGTCAAACAGAGAGTCCGCTCGCAGATCCCGGCTGCGCAAACAG GCTGAGTGTGAGGAGCTTGGGCAACGTGCTGAGGCTCTGAGGTCGGAGAAC
genomic: GGAAGCAGTCAAACAGAGAGTCCGCTCGCAGATCCCGGCTGCGCAAACAGgtgctgtgca ... gttgttccagGCTGAGTGTGAGGAGCTTGGGCAACGTGCTGAGGCTCTGAGGTCGGAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAAGGGAGCTCAAGAAGCAGAAGCGGAAGCAGTCAAACAGAGAGTCCGCTCGCAGATCCCGGCTGCGCAAACAGgtgctgtgcaaccctcgtgctgacacccaccctgctagctgaatttcatcttctaagagacccaagagaaatttcgtccaacgctttcatgggtcttgttcggttgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT