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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATGCCGCTGCTCATCTTACTTCGGCAGTGCTACTGATGCTACTTATGGAATTAGCTATTGAAATCTGCATTCGGAACCATCTATTAGCAACATCAGgttcgtctttctctcctcacctttcctctcgcatttctttttgtgtgcattgttgccttataacatatatcattctaggtcgtttgctttgaacccttaa...

Basic information

species Zea mays
transcript GRMZM2G018356_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 13
CTTCATGCCGCTGCTCATCTTACTTCGGCAGTGCTACTGATGCTACTTATGGAATTAGCTATTGAAATCTGCATTCGGAACCATCTATTAGCAACATCAGgttcgtctttctctcctcacctttcctctcgcatttctttttg-tgtgcattgttgccttataacatatatcattctaggtcgtttgctttgaacccttaa-
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CTTCATGCTGTGGCCCATCTAACTTCAGCAGTGATACTGATGCTGCTTATGGAATTGGCTATTGAGATATGCATCCGCAACAATCTATTGGCAACATCAGgtcggtgtgttatctttctttttttttcatgcatcgttgcttgatatatcatgtaatgtttgtgcaagctttaatcctg--tgttctctcttggtttaagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67013703|gb|CO442452.1|CO442452
EST:     GGAATTAGCTATTGAAATCTGCATTCGGAACCATCTATTAGCAACATCAG                         GTTACCATACCCTTTATGAATGGTACCGAAAAGTGGAAAGCGAACATTTTC
genomic: GGAATTAGCTATTGAAATCTGCATTCGGAACCATCTATTAGCAACATCAGgttcgtcttt ... ttgttgtcagGTTACCATACCCTTTATGAATGGTACCGAAAAGTGGAAAGCGAACATTTTC
EST: gi|14529537|gb|BI096670.1|BI096670
EST:     GGAATTAGCTATTGAAATCTGCATTCGGAACCATCTATTAGCAACATCAG                         GTTACCATACCCTTTATGAATGGTACCGAAAAGTGGAAAGCGAACATTTTC
genomic: GGAATTAGCTATTGAAATCTGCATTCGGAACCATCTATTAGCAACATCAGgttcgtcttt ... ttgttgtcagGTTACCATACCCTTTATGAATGGTACCGAAAAGTGGAAAGCGAACATTTTC