Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G017086_T04 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagta--
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GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttatttctcgagtaaaaaacatactcc-ctttggtaaaactat-agaacaacacttttaagcaagaactacacttctttacagtaacttttgagaa
upper sequence: GRMZM2G017086_T04 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgta-----cgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcg---tctgtactagta------------------------
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GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGgtaaagctcactatctgcttttttgtgtgtgtttttggatagttatt-gttgagtcggacaaattatccttggaagaatttgtttgctttctgaaatttattttacaatgtcatcgtgcttggttatctcag
upper sequence: GRMZM2G017086_T04 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G20900.1 (Glycine max), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacg--tta--gtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagta--------------------------
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GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAAAAGGCTAAGATTTTGCGGgtagagctcactgtcttttttgtgtgtgtgtttttggatagttattgttgggttggacaaattatccttggaaagttttgtttgctttctaaagtttatttgacaatgtcatcgtgcttggttatctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32944644|gb|CF049463.1|CF049463EST: TCGCTTC-TTTGGAAAAGGGAATCAAACCAAAAGGCAAAGA-TTTACGA AA-AGAAACAGAAACTCCAAGCACCTCGGCAG
genomic: TCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagt ... tgctctgatgAACTGAAACAGAAACTCCAAGCACCTCGGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcctc