Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacag
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GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttatttctcgagtaaaaaacatactcc-ctttggt---aaaactatagaacaacacttttaagcaagaactacacttctttacagtaacttttgagaa--------------------------------------------------------------
upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgta-----cgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcg---tctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacag
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GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGgtaaagctcactatctgcttttttgtgtgtgtttttggatagttatt-gttgagtcggacaaattatccttggaagaatttgtttgctttctgaaatttattttacaatgtcatcgtgcttggtt-atctcag-----------------------------------------
upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G20900.1 (Glycine max), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacg--tta--gtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttc--gtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacag
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GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAAAAGGCTAAGATTTTGCGGgtagagctcactgtcttttttgtgtgtgtgtttttggatagttattgttgggttggacaaattatccttggaaagttttgtttgctttctaaagtttatttgacaatgtcatcgtgcttggtt-atctcag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32866635|gb|CF006317.1|CF006317EST: TTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGA AAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAA
genomic: TTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagt ... taatttacagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG