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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCCGCGTGGGAGACAAGTGATGTGGTGAAACTGGATCTTTCTAAAAATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttcttagaaaggaaatattgtcatttattattattattattattattattattatcatgctcaacatgatttttttttacgtttgcccttcttttcag

Basic information

species Zea mays
transcript GRMZM2G015090_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015090_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g58030.1 (Oryza sativa), 5'ss of exon 15
AGCTGCCGCGTGGGAGACAAGTGATGTGGTGAAACTGGATCTTTCTAAAAATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttc----ttagaaaggaaatattgtcatt----tattattatt-attattattattattattatcatgc---------tcaacatgatttttt-----tttacgtttgcccttcttttcag
| |||| || |||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||    ||| | |   |||||||   ||    || |   ||| || | |   ||| |   | | |            || | || | |  ||     |||   | | || || |||||||
ACCTGCAGCTTGGGAGACAAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTTGTCATTATGCTCGTCACTTCAAgtgagtttctgaattacagatataatattgatgttgttatacttcaattgatcaattccattgtatgtgtgagataaaagtgtttcgatataactccttactctttttaatctaccatttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211332985|gb|FL087715.1|FL087715
EST:     NTTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAA                         TCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCATACAGTGGTT
genomic: ATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttct ... ttcttttcagTCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
EST: gi|32825687|gb|CD965403.1|CD965403
EST:     GATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAA                         TCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
genomic: GATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttct ... ttcttttcagTCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
EST: gi|32791127|gb|CD943363.1|CD943363
EST:     GATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAA                         TCCTTAGTTTTGTCTAATAACAAGATAAAAGGGTGGCCTCACACAGTGGTT
genomic: GATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttct ... ttcttttcagTCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
EST: gi|211374390|gb|FK951698.1|FK951698
EST:     ATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAA                         TCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCATACAGTGGTT
genomic: ATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttct ... ttcttttcagTCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
EST: gi|211332986|gb|FL087716.1|FL087716
EST:     CATTATGCTCATCACTTCAA                         TCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
genomic: CATTATGCTCATCACTTCAAgtaagtttct ... ttcttttcagTCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT
EST: gi|211330833|gb|FL087712.1|FL087712
EST:     ATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAA                         TCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCATACAGTGGTT
genomic: ATTCAATAGAAGATCTACCAAATGAGTTGTCATTATGCTCATCACTTCAAgtaagtttct ... ttcttttcagTCCTTAGTTTTGTCTAATAACAAGATAAAAAGGTGGCCTCACACAGTGGTT