1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat...
species | Zea mays |
transcript | GRMZM2G014805_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|22490260|gb|BU050183.1|BU050183
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|211029627|gb|FL157472.1|FL157472
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAACGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|18654871|gb|BM499676.1|BM499676
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|32833426|gb|CD973104.1|CD973104
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|18654872|gb|BM499677.1|BM499677
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCEST: gi|211029629|gb|FL157474.1|FL157474
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCC
EST: GCTTGGATCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|87152609|gb|DY397398.1|DY397398
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|60400188|gb|DN232995.1|DN232995
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|78025615|gb|DV494002.1|DV494002
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|60400323|gb|DN233130.1|DN233130
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|211029628|gb|FL157473.1|FL157473
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATMAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|76019059|gb|DT946229.1|DT946229
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|32833288|gb|CD972966.1|CD972966
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: CACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|211029631|gb|FL157476.1|FL157476
genomic: CACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|37375117|gb|CF623972.1|CF623972
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: ACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|18963174|gb|BM660282.1|BM660282
genomic: ACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAGATTTATAATTGAGAAAACTTEST: gi|166454773|gb|EG323323.1|EG323323
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTT
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCEST: gi|211029630|gb|FL157475.1|FL157475
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCC
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAAYTGAGAAAACTTAEST: gi|4827730|gb|AI668422.1|AI668422
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|32934161|gb|CF038973.1|CF038973
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|32940670|gb|CF045489.1|CF045489
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|33094794|gb|CF054788.1|CF054788
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|60344321|gb|DN211294.1|DN211294
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|18661897|gb|BM501640.1|BM501640
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAEST: gi|6760543|gb|AW324632.1|AW324632
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: GCTT-GAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - GGAGCA