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TTATCAAGTTGCTGAAGACTTGGCTAGAGCGTTTACTGAGCGTACGATCCTCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtttttagtcctcgattgtatcgtttgctagctactacagttggataacaaaatctttcctttgatcctttcgttttcgagtgaaattgtgcataatattttgttattaatgtaatgcttctgtaaccttttgttattatttccag
species | Zea mays |
transcript | GRMZM2G014136_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAAEST: gi|31356814|gb|CD441171.1|CD441171
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCTCTATATGTTATGGTGAACATAGATGAAEST: gi|78118416|gb|DV536802.1|DV536802
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAAEST: gi|24766737|gb|CA401884.1|CA401884
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCTCTATATGTTATGGTGAACATAGATGAAEST: gi|5739931|gb|AI947621.1|AI947621
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAAEST: gi|211243697|gb|FL432248.1|FL432248
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCACTATATGTTATGGTGAACATAGATGAAEST: gi|24768503|gb|CA403632.1|CA403632
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: AATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTCCTGGGCTTGCTGAGATCTCTATATGTTATGGTGAACATAGATGAAEST: gi|78022584|gb|DV490971.1|DV490971
genomic: AATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
EST: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAG GAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
genomic: TCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtt ... ttatttccagGAGGTACTGGGCTTGCTGAGATCTCTATATGTCATGGTGAACATAGATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCAAGTTGCTGAAGACTTGGCTAGAGCGTTTACTGAGCGTACGATCCTCCAAATATTTTTGGAGGATGAGATGAATGTTCCTTCTGGTTCCCTAAAGgtatattgtttttagtcctcgattgtatcgtttgctagctactacagttggataacaaaatctttcctttgatcctttcgttttcgagtgaaattgtgcataatattttgttattaatgtaatgcttctgtaaccttttgttattatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG