1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGGTAATTACTGAAGATGTCGTTCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGgtaatattgtagggcagtactgcgggtatactttgctttttgctaaaatttttgtttctctaattctaattgtatatgtggaacag
species | Zea mays |
transcript | GRMZM2G013811_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTG CTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGGEST: gi|37380228|gb|CF626902.1|CF626902
genomic: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGgtaatattgt ... tgtggaacagCTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGG
EST: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTG CTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGGEST: gi|40335050|gb|CK369120.1|CK369120
genomic: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGgtaatattgt ... tgtggaacagCTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGG
EST: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTG CTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGGEST: gi|211021113|gb|FL216263.1|FL216263
genomic: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGgtaatattgt ... tgtggaacagCTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGG
EST: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTG CTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGG
genomic: TCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGgtaatattgt ... tgtggaacagCTTTCGGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTAATTACTGAAGATGTCGTTCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGgtaatattgtagggcagtactgcgggtatactttgctttttgctaaaatttttgtttctctaattctaattgtatatgtggaacag
- - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - AAGGAA