1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATGTATCAGAATTTGATTACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaatagttgaaaaccgtacttcaaaccacaagctcgtacctatgccttatgttcactgatatcccatcatccatggtgtag
species | Zea mays |
transcript | GRMZM2G011136_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|71767790|gb|DR965727.1|DR965727
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|32850036|gb|CD989717.1|CD989717
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: GTGGGAAAGGAACTCTTCTTCACTTATGTGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|40303291|gb|CK347678.1|CK347678
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|6031446|gb|AW076348.1|AW076348
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|32839351|gb|CD979032.1|CD979032
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: GTGGGAAAGGAACTCTTCTTCACTTATGTGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|71445897|gb|DR826947.1|DR826947
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: TATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|5847013|gb|AW000092.1|AW000092
genomic: TATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: GTGGGAAAGGAACTTTTCTTCNCTTATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCEST: gi|5871178|gb|AW017649.1|AW017649
genomic: GTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
EST: AAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAA GTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
genomic: AAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaata ... catggtgtagGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTATCAGAATTTGATTACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaatagttgaaaaccgtacttcaaaccacaagctcgtacctatgccttatgttcactgatatcccatcatccatggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA