1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGGGTCCCAAGGAAAAGAAATTTCTGATGCTGATATTCTAGACTGGGCCAACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAGgtgcccaacgaacaaaacttcaattcctatttttgtcagaaaactccggttgcttagtttcctgtttttccctttcag
species | Zea mays |
transcript | GRMZM2G010937_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAG GACAAGAGCTTATCAAATGGATTGTTCTTCCTCGAGCTTCTTAGCACAGTAEST: gi|60358569|gb|DN225542.1|DN225542
genomic: ACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAGgtgcccaacg ... tccctttcagGACAAGAGCTTATCAAATGGATTGTTCTTCCTCGAGCTTCTTAGCACAGTA
EST: ACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAG GACAAGAGCTTATCAAATGGATTGTTCTEST: gi|67037325|gb|CO464173.1|CO464173
genomic: ACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAGgtgcccaacg ... tccctttcagGACAAGAGCTTATCAAATGGATTGTTCT
EST: ACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCA-G GACAAGAGCTTATCAAATGGATTGTTCTTCCTTGAGCTTCTTAGCACAGTA
genomic: ACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAGgtgcccaacg ... tccctttcagGACAAGAGCTTATCAAATGGATTGTTCTTCCTCGAGCTTCTTAGCACAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGTCCCAAGGAAAAGAAATTTCTGATGCTGATATTCTAGACTGGGCCAACAGCAAAGTGAAAGCGTCCGGAAGAACATCTCGAATGGAAAGTTTCAAGgtgcccaacgaacaaaacttcaattcctatttttgtcagaaaactccggttgcttagtttcctgtttttccctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC