1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATGGGACCTCGAACTGTTTCAAAGGGCTGATGCTGATTCTCTGCTACCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATGgtaggtttctcttctatcaaaactgttgtttctgcaacgactatatatttttttcctcttaaatctgtaattaaaagtcacatcagcacaatttgaatttgtatcatgtccatcgggaattctgtgctgcag
species | Zea mays |
transcript | GRMZM2G010779_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATG GTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATACEST: gi|10697540|gb|BE997264.1|BE997264
genomic: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATGgtaggtttct ... tgtgctgcagGTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATAC
EST: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATG GTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATACEST: gi|71760209|gb|DR958146.1|DR958146
genomic: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATGgtaggtttct ... tgtgctgcagGTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATAC
EST: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATG GTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATACEST: gi|211340568|gb|FL469171.1|FL469171
genomic: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATGgtaggtttct ... tgtgctgcagGTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATAC
EST: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATG GT-T--AGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATAC
genomic: CCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATGgtaggtttct ... tgtgctgcagGTGTTTAGCCTCTTCGAAACTAGCACCTTCAATGATGGGATGGGACTATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGGACCTCGAACTGTTTCAAAGGGCTGATGCTGATTCTCTGCTACCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATGgtaggtttctcttctatcaaaactgttgtttctgcaacgactatatatttttttcctcttaaatctgtaattaaaagtcacatcagcacaatttgaatttgtatcatgtccatcgggaattctgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT