1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATCAGTTGGAGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaaccatagcgcagcacaccaaaataaactttcttgcttttgtacctttctgcttgctcttttgtgctgtcatttctctaactttatttgtctaccatggtacaaatttcag
species | Zea mays |
transcript | GRMZM2G010085_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAG GGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGTEST: gi|6194488|gb|AW146592.1|AW146592
genomic: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaacca ... caaatttcagGGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
EST: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAG GGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGTEST: gi|33091877|gb|CF051871.1|CF051871
genomic: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaacca ... caaatttcagGGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
EST: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAG GGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGTEST: gi|33091506|gb|CF051500.1|CF051500
genomic: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaacca ... caaatttcagGGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
EST: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAG GGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGTEST: gi|6194533|gb|AW146637.1|AW146637
genomic: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaacca ... caaatttcagGGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
EST: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAG GGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGTEST: gi|33098069|gb|CF058029.1|CF058029
genomic: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaacca ... caaatttcagGGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
EST: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAG GGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
genomic: AGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaacca ... caaatttcagGGTTTTGCGTCATGGACAAGGAGAGACTTCAACACATTTATTCGTGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGTTGGAGCCTTTGACAGCAGAGGAGCAGGAAGAGAAGGAACAATTATTAGAGGAGgttagaaccatagcgcagcacaccaaaataaactttcttgcttttgtacctttctgcttgctcttttgtgctgtcatttctctaactttatttgtctaccatggtacaaatttcag
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG