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CGAACACATACTTTTGGCATATGGTCGTCGTCATAGCTCGCTCCTTAGGAGCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGgtagttatggcaatcatattccaatttccaaatcatagtttgattggtaactgatatcatattaattattgtatggggatggtgacagtgctggttctgc...
species | Zea mays |
transcript | GRMZM2G007229_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAG GTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAAEST: gi|22935603|gb|BU571878.1|BU571878
genomic: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGgtagttatgg ... ttacttttagGTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAA
EST: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAG GTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAAEST: gi|87155951|gb|DY400740.1|DY400740
genomic: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGgtagttatgg ... ttacttttagGTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAA
EST: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAG GTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAAEST: gi|26560158|gb|CA832393.1|CA832393
genomic: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGgtagttatgg ... ttacttttagGTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAA
EST: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAG GTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAA
genomic: GCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGgtagttatgg ... ttacttttagGTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAACACATACTTTTGGCATATGGTCGTCGTCATAGCTCGCTCCTTAGGAGCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGgtagttatggcaatcatattccaatttccaaatcatagtttgattggtaactgatatcatattaattattgtatggggatggtgacagtgctggttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG