1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGACGGGGTTTTACTCAGAGGTACTCATACGCAAGACAATATCGCTCACCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttgaatcaaagtttgatctattgttttcatttgacttagagtgttaaattacgtttcccctcttatgtag
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCTTCTGCTGATCGCTCACATCGCTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGEST: gi|71427167|gb|DR808217.1|DR808217
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
EST: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGEST: gi|7216421|gb|AW562543.1|AW562543
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
EST: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGEST: gi|31355909|gb|CD440266.1|CD440266
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
EST: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGACGGGGTTTTACTCAGAGGTACTCATACGCAAGACAATATCGCTCACCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttgaatcaaagtttgatctattgttttcatttgacttagagtgttaaattacgtttcccctcttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA