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GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccatttgtaactcttatttttgctattgatatagttgtaacacatttctagattggtctgtgacaatattccatcggaattggcag
species | Zea mays |
transcript | GRMZM2G004932_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|6031341|gb|AW076198.1|AW076198
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|32936624|gb|CF041443.1|CF041443
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|211480673|gb|FK996001.1|FK996001
genomic: GGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|71433706|gb|DR814756.1|DR814756
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|71761875|gb|DR959812.1|DR959812
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|60348735|gb|DN215708.1|DN215708
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|94479652|gb|EB708610.1|EB708610
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|94479651|gb|EB708609.1|EB708609
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GAATACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|87157419|gb|DY402208.1|DY402208
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|67037463|gb|CO464279.1|CO464279
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|60344598|gb|DN211571.1|DN211571
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|26560069|gb|CA832304.1|CA832304
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|89246745|gb|DY618532.1|DY618532
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|23199633|gb|BU582198.1|BU582198
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|78026916|gb|DV495303.1|DV495303
genomic: GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: TAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|32930896|gb|CF035708.1|CF035708
genomic: TAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: TAAATACATAG ATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: TAAATACATAGgtagccattt ... gaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTACTTCAAAAGCAAAAAGATGGAGATGACGATTAAATACATAGgtagccatttgtaactcttatttttgctattgatatagttgtaacacatttctagattggtctgtgacaatattccatcggaattggcag
- - - - - AAGCAA
- - - - - - - - - AAGATG
- - - - - - - - - - GATGGA
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATG