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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTCAAACCATGTCCTCAGTTAAGACCTCTCAGACCTTGCTAGGCCAGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaatatggaacatctgaatctttgtttattattctgtatttatatcgctgtattttgtatgatgctcag

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155407|gb|DY400196.1|DY400196
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTGAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|211264027|gb|FL283565.1|FL283565
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|88756696|gb|DY540837.1|DY540837
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|76926950|gb|DV171069.1|DV171069
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|71304827|gb|DR788527.1|DR788527
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|211534613|gb|FL443294.1|FL443294
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTGAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|211264028|gb|FL283566.1|FL283566
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|78544033|gb|DV621531.1|DV621531
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTGAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|60336702|gb|DN203675.1|DN203675
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|211138345|gb|FL473246.1|FL473246
EST:     GAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: GAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|71304825|gb|DR788526.1|DR788526
EST:     GATCAGCCCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACTTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: GATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|71757532|gb|DR955469.1|DR955469
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|67040818|gb|CO467073.1|CO467073
EST:     AGATCATACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: gi|211264029|gb|FL283567.1|FL283567
EST:     AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG                         GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAACTCAAACCATGTCCTCAGTTAAGACCTCTCAGACCTTGCTAGGCCAGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaatatggaacatctgaatctttgtttattattctgtatttatatcgctgtattttgtatgatgctcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG