Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgtttttctatatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg...

Basic information

species Zea mays
transcript GRMZM2G000645_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgtttttctatatattaatt-gcttaatcagatgcaaatttctcatttcttccatagttac-ctaaacattgcctctgg-
 |||||||| |||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||| ||||||||   ||| |  | ||  ||  | |  ||||  | ||| |||| | | | | | |    | | | |||||||||| ||    || ||  | | |||  |    
GTCATTTGGATCTGCATTGGAGTTTGTTTGGTCATCAGAAGGAGAGTATGCTATCAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtt--tggcccacattgatt-gtagcctttccttttatgaatttgatcagtaaaactgtagtgtttcatttcttcaatcaccactctggagaatgcaccatct

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgtttttctatatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg------
||||||||| || |||||||||||||||||||| ||||| || || |||||  | || ||||||||||| |   | || |||||||  |||   || |||||   || |   ||||   ||| |  || ||  | |||   |||  | ||  || | || |            | | | ||  ||||| | |   |          
ATCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTTAAAATTTTCAGCAAAAATTTCCAGgt-tgtgcttcactttcagttact-cttatcattttatactttgtcttat--gacgaaagtgatggtgacaacctacaatt--ctaaataatttgttaaaaggata

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgttttt-ctatatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg-----
||||||||| || || ||||||||||||||||| ||||| || || |||||  | || ||||||||||| |   | || |||||||  |||   || |||||   || |    | |   ||| | || |   | |||| |   |  | |  |  | |  |  |  | |   | | || | |   ||||| | |   |         
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgt-tgtgcttcattatcagttactcttatcattttatactttgtattaagacgaaagtga--tggtgacagcctacaaatt---ctaaataatttgttaaaaggat

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttag--tttattgtttttcta-tatattaattgcttaatcag-atgcaaatttctcatttcttcc-atagttacctaaacattgcctctgg
 |||||||| || |||||||||||||||||||| || || |||||||||||  | || |||||||||||||  || || |||||||  |||   || |||||   |  | |  |  |   ||| ||   | |||| | |  |     |||  || |  || ||    |  |    |||      || | ||||            
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttaaaaactttgtttcctctctaatctcgtgcaatcttgttctgtgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa-----

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttag--tttattgtttttcta----tatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg
 |||||||| || |||||||||||||||||||| || || |||||||||||  | || |||||||||||||  || || |||||||  |||   || |||||   |  | |  ||||   || |||   | ||||    | | | |  |  ||  |    |    |     ||  |  |   || ||    |||            
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa------

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatgg-----------tctgctttagtttattgttttt--ctatatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg------------------------
 |||||||| |||| ||||||||||||||||||||| || || || | |||  |||| |||||  ||||||  || || || || |  |||   || |||||   |             |||| | ||     || | ||   |  | |||  || | |   |  || | |   ||   | |  |     || || ||| |  | |  |||||                        
GTCATTTGGTTCTGGACTGGAATTTGTTTGGTCATCCGAGGGGGAGTGTGCGGTTAGAGAAAGCTCATCAAAGATTAAAATATTTAGCAAAAATTTCCAGgtttctaaatctttttctctctgatctaagccgttctgttcaaccctgtatctatggtt--gttggaagtattattgatactggtcatggagatagctatat-tcggatctggctcattcagaaaatacattttcag

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtct--------gctttagtt-tattgtttttctatatattaattgcttaatcagatgcaaatttctcatttcttccatagttac--ctaaacattgcctctgg-------------------------
||| ||||||||||  |||||||||||||||||||| || || |||| |||  |||| |||||  ||||||  |||||||| |||| ||||   || |||||      |          || ||| |  || | ||||  |  |   | |||      |   |   ||||| |  ||   | | ||||  ||  |||    | || | |                           
ATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGgtttgctattctcattatggccttactcatactattttgttggagtatgattctagggttgaa--gaaattgcagatgcttgcaatagagacagctattactggcttattatattaataaaaggtggtgttttcag

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgtttttctatatattaattgcttaatcagatgcaaatttctcatttct-tccatagttacctaaacat-tgcctctgg-------
 || ||||| || ||| |||||||||| ||||||||||| || ||||||||  | || |||||||||||||   | |||||||||| |||    || |||||   ||  |     |      |||||| ||| |  || |     |  || || |||||  |    || | | | |||   |   |     | |||  |||        
GTCTTTTGGTTCGGCATTGGAATTTGTATGGTCATCAGATGGTGAATATGCTGTCAGAGAAAGTACATCAAAGGTTAAGATTTTCAGTAAGAATTTCCAGgtttgtgtcccctcct------ttgtttctctctg-atgag--aatagattaggtgcaatatatatatatatatgcatgtgtgtgtgtgtgtgtgctgctgaaaacatt

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 12
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgtttttctatatattaattg---cttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg
||||||||| || || ||||||||||||||||||||||| | |||||||||  | ||||||||||||||||| || ||||||||||  ||| | || |||||       ||     ||||||   | |  | |  |||| || |   |||      | |||||||   || | ||||  | ||| |  |    ||     |  
ATCATTTGGCTCAGCGCTGGAATTTGTTTGGTCATCAGATGCAGAATATGCTGTGAGGGAAAGTACATCAAGGATTAAGATTTTCAGCAAAACATTCCAGgttttgatcctttcaaagtttagattctcacgacttattgatgggggcttttctccaagcaaattag-caatgcttcttttgttgcaaagttgtttatctt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32865242|gb|CF004924.1|CF004924
EST:     CAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAG                         GAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTATGGTGGG
genomic: CAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtc ... gattttttagGAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTATGGTGGG
EST: gi|31353243|gb|CD437600.1|CD437600
EST:     CAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAG                         GAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTATGGTGGG
genomic: CAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtc ... gattttttagGAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTATGGTGGG