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GGGATTTATTGAAGCTGCTGGATGTTTCATCTGCTGAAAATGTTCTGCCAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagtacttgttttgtttattttctgattttaaatagtcatgaacaaaactgcacaacaactagtgctggagaagttagtcatttggtgccactgt...
species | Zea mays |
transcript | GRMZM2G000039_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAG ATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAAEST: gi|37421188|gb|CF648290.1|CF648290
genomic: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagta ... tcatttccagATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAA
EST: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAG ATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAAEST: gi|13516069|gb|BG518345.1|BG518345
genomic: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagta ... tcatttccagATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAA
EST: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAG ATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAAEST: gi|7162245|gb|AW519852.1|AW519852
genomic: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagta ... tcatttccagATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAA
EST: CAACAACATACGGTAGCTTACAACCTTCACTCGGGAAACATCGCTTGAAG ATTGGTGAGTTCATCTCTGGTCTTCTATCAATTGGTAGTGCAGCTGCCGAAEST: gi|13516090|gb|BG518366.1|BG518366
genomic: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagta ... tcatttccagATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAA
EST: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAG AT-GTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAA
genomic: CAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagta ... tcatttccagATTGTTGAGTTCATCTCTGTTCTTCTATCAATTGGTAGTGCAGCTGCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATTTATTGAAGCTGCTGGATGTTTCATCTGCTGAAAATGTTCTGCCAACAACATACGGTAGCTTACAACCTCCACTCGGGAAACATCGCTTGAAGgtaagcagtacttgttttgtttattttctgattttaaatagtcatgaacaaaactgcacaacaactagtgctggagaagttagtcatttggtgccactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaaa